Structure of PDB 8q54 Chain U

Receptor sequence
>8q54U (length=294) Species: 145263 (Methanothermobacter marburgensis) [Search protein sequence]
MDPMITGLGVVALMGAAATIAGAAEDLESDVGSQSNPNSQVQLAPQMGHL
HRIINKAVSGEPVAYGTWCGIAGSVAFVLMNSMQLPVIMAIAIGAVIAAM
VHTTYAVTSHMGRIVSQSQFNQPLFMDMLVQHLGPIAGHGFIVTFCTVGL
SYLMTLPIPGFAHPFPLPLLAVLWGITIGAIGSSTGDVHYGAEREYQQYP
FGGGIPVAIHGDITTKAELGARNSMDVVHFCAKYGGPLTGFAFGAIVFLS
FWNTIVFGITGGIISGLIIVLLLIILNNRLEVFARNRYGPYKEE
3D structure
PDB8q54 Cryo-EM structure of the methanogenic Na+ translocating N5-methyl-H4MPT:CoM methyltransferase complex
ChainU
Resolution2.39 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 JCV U M100 T104 M100 T104
BS02 COM U S35 N38 S39 R113 S35 N38 S39 R113
BS03 JCV U F145 Y152 L156 H229 K233 F145 Y152 L156 H229 K233
BS04 JCV U F241 F257 I264 L276 F283 R287 F241 F257 I264 L276 F283 R287
BS05 JCV U M83 L85 A137 M83 L85 A137
External links
PDB RCSB:8q54, PDBe:8q54, PDBj:8q54
PDBsum8q54
PubMed
UniProtP80186|MTRE_METTM Tetrahydromethanopterin S-methyltransferase subunit E (Gene Name=mtrE)

[Back to BioLiP]