Structure of PDB 6vwl Chain U

Receptor sequence
>6vwlU (length=75) Species: 562 (Escherichia coli) [Search protein sequence]
RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF
AKADGKVKFEVKGPKNRKFISIEAE
3D structure
PDB6vwl mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.
ChainU
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna U G69 P70 N72 G63 P64 N66
BS02 rna U N8 R10 S12 E13 A14 K15 R16 K20 R21 F22 G23 E25 L28 A29 G30 S31 I32 R37 G38 T39 K40 F41 G50 R51 D52 F56 F65 R73 N2 R4 S6 E7 A8 K9 R10 K14 R15 F16 G17 E19 L22 A23 G24 S25 I26 R31 G32 T33 K34 F35 G44 R45 D46 F50 F59 R67
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0043022 ribosome binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0001558 regulation of cell growth
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042256 cytosolic ribosome assembly
GO:0090070 positive regulation of ribosome biogenesis
GO:1902626 assembly of large subunit precursor of preribosome
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:6vwl, PDBe:6vwl, PDBj:6vwl
PDBsum6vwl
PubMed32427100
UniProtP0A7L8|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)

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