Structure of PDB 6rdm Chain U

Receptor sequence
>6rdmU (length=523) Species: 37502 (Polytomella sp. Pringsheim 198.80) [Search protein sequence]
ADAKALDELRKPKFSSKYLIQHVSQKLIPAVKEWEKSYQPPVIHLGRVLS
VGDGIARVYGLKSVQAGELVCFDSGVKGMALNLQADHVGVVVFGNDSVIH
QGDLVYRTGQIVNVPIGPGTLGRVTDGLGQPIDGKGPLTNVRSSLVEVKA
PGIIARQSVREPLFTGVKAVDALVPIGRGQRELIIGDRQTGKTAVAIDAI
IHQKNCNEQVPKAQRVYCVYVAVGQKRSTVAQLVKLFTQTGAMRYTIMVS
ATASDAAPLQFLAPYSGCAMAEYFRDTGKHGLIIYDDLSKQSVAYRQMSL
LLRRPPGREAFPGDVFYLHSRLLERAAKLSKELGGGSLTAFPVIETQAGD
VSAYIATNVISITDGQIFLETELFYKGIRPALNVGLSVSRVGSAAQFPGM
KQVAGTLKLELAQYREVAAFAQFGSDLDAATQYVLERGARLTEMLKQKQF
APIPIERQTVAVYAATKGFLDKVRVQDIVAAEEAVISQVNPAVFKILKAN
GKITPALDAHLKAELRKVKLPGA
3D structure
PDB6rdm Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling.
ChainU
Resolution3.44 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K231 Q264 K265 R429
Catalytic site (residue number reindexed from 1) K192 Q225 K226 R390
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP U Q228 G230 K231 T232 A233 F413 R418 K487 Q488 Q189 G191 K192 T193 A194 F374 R379 K448 Q449
BS02 ADP U V427 R429 V388 R390
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0032559 adenyl ribonucleotide binding
GO:0043531 ADP binding
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Biological Process
GO:0006754 ATP biosynthetic process
GO:0015986 proton motive force-driven ATP synthesis
GO:0046034 ATP metabolic process
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6rdm, PDBe:6rdm, PDBj:6rdm
PDBsum6rdm
PubMed31221832
UniProtA0ZW40

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