Structure of PDB 6q98 Chain U

Receptor sequence
>6q98U (length=103) Species: 562 (Escherichia coli) [Search protein sequence]
AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPA
LNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSE
TIK
3D structure
PDB6q98 How a circularized tmRNA moves through the ribosome.
ChainU
Resolution4.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna U R6 R7 T15 G16 K17 V28 K33 K43 K44 H45 Q46 P48 Q66 S68 N69 R82 F85 K92 K97 R5 R6 T14 G15 K16 V27 K32 K42 K43 H44 Q45 P47 Q65 S67 N68 R81 F84 K91 K96
BS02 MG U S68 N69 S67 N68
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:6q98, PDBe:6q98, PDBj:6q98
PDBsum6q98
PubMed30765567
UniProtP60624|RL24_ECOLI Large ribosomal subunit protein uL24 (Gene Name=rplX)

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