Structure of PDB 6nd4 Chain U

Receptor sequence
>6nd4U (length=407) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence]
MKIKTIKRSADDYVPVKSTQESQMPRNLNPELHPFERAREYTKALNATKL
ERMFAKPFVGQLGYGHRDGVYAIAKNYGSLNKLATGSADGVIKYWNMSTR
EEFVSFKAHYGLVTGLCVTQNFMLSCSDDKTVKLWSINEGLIRTFDGESA
FQGIDSHRENSTFATGGAKIHLWDVNRLKPVSDLSWGADNITSLKFNQNE
TDILASTGSDNSIVLYDLRTNSPTQKIVQTMRTNAICWNPMEAFNFVTAN
EDHNAYYYDMRNLSRSLNVFKDHVSAVMDVDFSPTGDEIVTGSYDKSIRI
YKTNHGHSREIYHTKRMQHVFQVKYSMDSKYIISGSDDGNVRLWRSKAWE
RSNVKTTREKNKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIKN
IELSSIK
3D structure
PDB6nd4 Conformational switches control early maturation of the eukaryotic small ribosomal subunit.
ChainU
Resolution4.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna U E190 N191 K386 E159 N160 K355
BS02 rna U R415 H416 R417 R384 H385 R386
BS03 rna U S18 T19 A55 K56 F58 I342 H344 E390 S18 T19 A55 K56 F58 I311 H313 E359
Gene Ontology
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6nd4, PDBe:6nd4, PDBj:6nd4
PDBsum6nd4
PubMed31206356
UniProtP33750|DCA13_YEAST Protein SOF1 (Gene Name=SOF1)

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