Structure of PDB 6fti Chain U

Receptor sequence

>6ftiU (length=99) Species: 9986 (Oryctolagus cuniculus)

QVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERS
KSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF

3D structure

• PDB: 6fti Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum.
• Chain: U
• Resolution: 4.2 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	U	K48 N50 G51 S79 K80 R81 Y82 K84 Y85 K88 K89 K92 R97 V103 A104 K107 R113	K32 N34 G35 S63 K64 R65 Y66 K68 Y69 K72 K73 K76 R81 V87 A88 K91 R97

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 00:55:21 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6fti', asym_id = 'U', title = 'Structural basis for coupling protein transport ...osylation at the mammalian endoplasmic reticulum.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6fti', asym_id='U', title='Structural basis for coupling protein transport ...osylation at the mammalian endoplasmic reticulum.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6fti', asym_id = 'U'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6fti', asym_id='U')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>