Structure of PDB 5nwy Chain U

Receptor sequence
>5nwyU (length=47) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFF
3D structure
PDB5nwy The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling.
ChainU
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna U N11 K22 G24 Y25 R27 N28 F29 N11 K22 G24 Y25 R27 N28 F29
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:5nwy, PDBe:5nwy, PDBj:5nwy
PDBsum5nwy
PubMed28556777
UniProtP0A7R1|RL9_ECOLI Large ribosomal subunit protein bL9 (Gene Name=rplI)

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