Structure of PDB 4d5l Chain U

Receptor sequence
>4d5lU (length=101) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRK
TPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIA
D
3D structure
PDB4d5l Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
ChainU
Resolution9.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna U R21 E33 K51 G52 V54 R55 M56 P57 T58 T60 K67 T68 P69 C70 G71 E72 G73 S74 K75 T76 R83 H85 K86 R87 L88 R4 E16 K34 G35 V37 R38 M39 P40 T41 T43 K50 T51 P52 C53 G54 E55 G56 S57 K58 T59 R66 H68 K69 R70 L71
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:4d5l, PDBe:4d5l, PDBj:4d5l
PDBsum4d5l
PubMed25601755
UniProtG1SIZ2|RS20_RABIT Small ribosomal subunit protein uS10 (Gene Name=RPS20)

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