Structure of PDB 2c37 Chain U

Receptor sequence
>2c37U (length=260) Species: 2287 (Saccharolobus solfataricus) [Search protein sequence]
MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKA
DGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPDENAIELA
RVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLAS
VAALYNTKVYKVEQISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDL
DEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKL
LEELKKHLGI
3D structure
PDB2c37 Structural Basis of 3' End RNA Recognition and Exoribonucleolytic Cleavage by an Exosome Rnase Ph Core.
ChainU
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.13.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 U5P U Y75 I85 Y75 I85
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0035925 mRNA 3'-UTR AU-rich region binding
Biological Process
GO:0006401 RNA catabolic process
GO:0016075 rRNA catabolic process
Cellular Component
GO:0000177 cytoplasmic exosome (RNase complex)
GO:0000178 exosome (RNase complex)
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2c37, PDBe:2c37, PDBj:2c37
PDBsum2c37
PubMed16285928
UniProtQ9UXC0|RRP42_SACS2 Exosome complex component Rrp42 (Gene Name=rrp42)

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