Structure of PDB 6vmi Chain T

Receptor sequence

>6vmiT (length=166) Species: 9606 (Homo sapiens) [Search protein sequence]

ISRKWEKKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRG
MSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAEST
SGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHA
KEYIQQLRSRTIVHTL

3D structure

PDB

6vmi Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation.

Chain

Resolution

2.96 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	T	I47 S48 R49 K50 W51 K53 K56 R78 Y82 S83 D85 K86 W88 K111 T146 R149 K154 R157 Y158 H159 G160 R161 G162 R163 F164 M167 E168 K169 V170 Y171 S205 R206 T207 V209 H210	I1 S2 R3 K4 W5 K7 K10 R32 Y36 S37 D39 K40 W42 K65 T100 R103 K108 R111 Y112 H113 G114 R115 G116 R117 F118 M121 E122 K123 V124 Y125 S159 R160 T161 V163 H164

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005739	mitochondrion
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6vmi, PDBe:6vmi, PDBj:6vmi
PDBsum	6vmi
PubMed	32737313
UniProt	E7ESL0

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