Structure of PDB 6om0 Chain T

Receptor sequence

>6om0T (length=175) Species: 9606 (Homo sapiens)

MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQ
LKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDL
TTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKI
KFPLPHRVLRRQHKPRFTTKRPNTF

3D structure

• PDB: 6om0 Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
• Chain: T
• Resolution: 3.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	T	Y46 S49 K52 K53 K55 K56 S57 R87 R120	Y46 S49 K52 K53 K55 K56 S57 R87 R120
BS02	rna	T	K2 S4 G5 Y63 F68 K70 P72 R74 R87 S88 H91 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 A134 R139 F145 H146 D147 S148 P155 H156 L159 R160 Q162 K164 P165 R166 T168 T169 K170 R171 P172 N173 T174	K2 S4 G5 Y63 F68 K70 P72 R74 R87 S88 H91 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 A134 R139 F145 H146 D147 S148 P155 H156 L159 R160 Q162 K164 P165 R166 T168 T169 K170 R171 P172 N173 T174

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0016020 membrane
• GO:0022625 cytosolic large ribosomal subunit
• GO:0022626 cytosolic ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6om0, PDBe:6om0, PDBj:6om0
• PDBsum: 6om0
• PubMed: 31160784
• UniProt: Q02543|RL18A_HUMAN Large ribosomal subunit protein eL20 (Gene Name=RPL18A)