Structure of PDB 6la9 Chain T

Receptor sequence

>6la9T (length=74) Species: 9606 (Homo sapiens) [Search protein sequence]

DHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIK
RLVTTGVLKQTKGVGASGSFRLAK

3D structure

PDB

6la9 Near-atomic resolution structures of interdigitated nucleosome fibres.

Chain

Resolution

3.7 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	T	K27 Y28 S46 Q48 Q67 K85 G86 S92	K4 Y5 S23 Q25 Q44 K62 G63 S69
BS02	dna	T	R47 K69 K73 R74 A89 S90 K97	R24 K46 K50 R51 A66 S67 K74

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0003680	minor groove of adenine-thymine-rich DNA binding
GO:0003690	double-stranded DNA binding
GO:0003723	RNA binding
GO:0005515	protein binding
GO:0030527	structural constituent of chromatin
GO:0031490	chromatin DNA binding
GO:0031491	nucleosome binding
GO:0031492	nucleosomal DNA binding

	Biological Process
GO:0006334	nucleosome assembly
GO:0030261	chromosome condensation
GO:0031507	heterochromatin formation
GO:0045910	negative regulation of DNA recombination
GO:2000679	positive regulation of transcription regulatory region DNA binding

	Cellular Component
GO:0000785	chromatin
GO:0000786	nucleosome
GO:0000791	euchromatin
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005694	chromosome
GO:0005794	Golgi apparatus
GO:0015629	actin cytoskeleton
GO:0016604	nuclear body
GO:0017053	transcription repressor complex

External links