Structure of PDB 3jaj Chain Se

Receptor sequence

>3jajSe (length=57) Species: 9986 (Oryctolagus cuniculus)

HGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKK
KGPNANS

3D structure

• PDB: 3jaj Structures of the scanning and engaged states of the mammalian SRP-ribosome complex.
• Chain: Se
• Resolution: 3.75 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Se	R8 K11 V12 R13 Q15 T16 K21 K26 T29 G30 R31 A32 R34 R35 Q37 N39 R40 R41 N44 N56 N58	R6 K9 V10 R11 Q13 T14 K19 K24 T27 G28 R29 A30 R32 R33 Q35 N37 R38 R39 N42 N54 N56

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 13:26:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '3jaj', asym_id = 'Se', title = 'Structures of the scanning and engaged states of the mammalian SRP-ribosome complex.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='3jaj', asym_id='Se', title='Structures of the scanning and engaged states of the mammalian SRP-ribosome complex.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '3jaj', asym_id = 'Se'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='3jaj', asym_id='Se')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>