Structure of PDB 7zjw Chain Sb

Receptor sequence

>7zjwSb (length=141) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPV
LLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASK
KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR

3D structure

PDB

7zjw Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.

Chain

Resolution

2.8 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Sb	Q11 V12 F13 R15 K17 T18 H24 K33 R37 R69 R71 K73 G74 G75 G76 H77 V78 A79 Q80 R117 R125 R126 C127 E128 S129 K130 K131 F132 G133 G136 R138 A139 R140 Y141 Q142 K143 S144 Y145	Q6 V7 F8 R10 K12 T13 H19 K28 R32 R64 R66 K68 G69 G70 G71 H72 V73 A74 Q75 R112 R120 R121 C122 E123 S124 K125 K126 F127 G128 G131 R133 A134 R135 Y136 Q137 K138 S139 Y140

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364	rRNA processing
GO:0006412	translation
GO:0042274	ribosomal small subunit biogenesis
GO:1990830	cellular response to leukemia inhibitory factor

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0032040	small-subunit processome
GO:0045202	synapse
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:7zjw, PDBe:7zjw, PDBj:7zjw
PDBsum	7zjw
PubMed	35709277
UniProt	G1SGX4\|RS16_RABIT Small ribosomal subunit protein uS9 (Gene Name=RPS16)