Structure of PDB 8p5d Chain SS0

Receptor sequence
>8p5dSS0 (length=144) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
KLVFNNNPLPIQAMIRMFNTNIDGKKQIIKALTTIRGIGDRLSLAILRRA
KIPTDKRAGELTEDELNEINEVILNPQKYDIPEWMLNHQNDPIDGTTKHL
IGNQIEGTIRLWNERGKKIGLVRAFRTSLGLKVRGQRTKSNGRG
3D structure
PDB8p5d Spraguea lophii ribosome
ChainSS0
Resolution10.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna SS0 Q33 I35 K36 R42 G43 L48 W90 M91 L92 N93 H94 Q95 N96 D97 P98 W118 R132 K138 V139 R140 Q142 R143 T144 S146 N147 G148 R149 Q27 I29 K30 R36 G37 L42 W84 M85 L86 N87 H88 Q89 N90 D91 P92 W112 R126 K132 V133 R134 Q136 R137 T138 S140 N141 G142 R143
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7XJA1

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