Structure of PDB 8scb Chain SS

Receptor sequence

>8scbSS (length=140) Species: 9986 (Oryctolagus cuniculus)

LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDL
TKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANG
LDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRR

3D structure

• PDB: 8scb Structure and consequences of eRF1 glued to the ribosomal decoding center
• Chain: SS
• Resolution: 2.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	SS	R24 K25 F28 K34 G35 V36 G37 R38 R39 Y40 R55 W82 F83 N85 Q87 K88 Q97 L107 H120 R121 R124 H125 L129 R130 V131 R132 Q134 H135 T136 K137 T138 T139 G140 R141 R142	R22 K23 F26 K32 G33 V34 G35 R36 R37 Y38 R53 W80 F81 N83 Q85 K86 Q95 L105 H118 R119 R122 H123 L127 R128 V129 R130 Q132 H133 T134 K135 T136 T137 G138 R139 R140

Gene Ontology

Molecular Function

• GO:0003676 nucleic acid binding
• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0015935 small ribosomal subunit
• GO:0022626 cytosolic ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8scb, PDBe:8scb, PDBj:8scb
• PDBsum: 8scb
• PubMed: 38172604
• UniProt: G1TPG3|RS18_RABIT Small ribosomal subunit protein uS13 (Gene Name=RPS18)