Structure of PDB 6zmi Chain SS

Receptor sequence

>6zmiSS (length=145) Species: 9606 (Homo sapiens) [Search protein sequence]

MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADI
DLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA
NGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRT

3D structure

PDB

6zmi Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.

Chain

Resolution

2.6 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	SS	R24 K25 F28 K34 G35 G37 R39 Y40 R55 W82 F83 N85 Q87 K88 L107 H120 R121 H125 L129 R130 V131 R132 Q134 H135 T136 K137 T138 T139 R141 R142 R144 T145	R24 K25 F28 K34 G35 G37 R39 Y40 R55 W82 F83 N85 Q87 K88 L107 H120 R121 H125 L129 R130 V131 R132 Q134 H135 T136 K137 T138 T139 R141 R142 R144 T145

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0005925	focal adhesion
GO:0014069	postsynaptic density
GO:0015935	small ribosomal subunit
GO:0016020	membrane
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0045202	synapse
GO:0070062	extracellular exosome
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:6zmi, PDBe:6zmi, PDBj:6zmi
PDBsum	6zmi
PubMed	32680882
UniProt	P62269\|RS18_HUMAN Small ribosomal subunit protein uS13 (Gene Name=RPS18)