Structure of PDB 8fla Chain SR
Receptor sequence
>8flaSR (length=601) Species:
9606
(Homo sapiens) [
Search protein sequence
]
AHYNFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKV
KFTQQNYHDRLSQILTDFPKLDDIHPFYADLMNILYDKDHYKLALGQINI
AKNLVDNVAKDYVRLMKYGDSLYRCKQLKRAALGRMCTVIKRQKQSLEYL
EQVRQHLSRLPTIDPNTRTLLLCGYPNVGKSSFINKVTRADVDVQPYAFT
TKSLFVGHMDYKYLRWQVVDTPGILDHPLEDRNTIEMQAITALAHLRAAV
LYVMDLSEQCGHGLREQLELFQNIRPLFINKPLIVVANKCDVKRIAELSE
DDQKIFTDLQSEGFPVIETSTLTEEGVIKVKTEACDRLLAHRVETKMKGN
KVNEVLNRLHLAIPTRRDDKERPPFIPEGVKKRERDLELEMGDDYILDLQ
KYWDLMNLSEKHDKIPEIWEGHNIADYIDPAIMKKLEELEKEEELRTAAG
EYDSVSESEDEEMLEIRQLAKQIREKKKLKILESKEKNTQGPRMPRTAKK
VQRTVLEKEMRSLGVDMDDKDDAHYAVQARRSRSITRKRTPRDVSGLRDV
KMVKKAKTMMKNAQKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDR
R
3D structure
PDB
8fla
Principles of human pre-60 S biogenesis.
Chain
SR
Resolution
2.63 Å
3D
structure
[
Spin on
]
[
Spin off
]
[
Reset orientation
]
[
High quality
]
[
Low quality
]
[
White background
]
[
Black background
]
[
Download
]
[
Download structure with residue number starting from 1
]
Enzymatic activity
Enzyme Commision number
?
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
rna
SR
S578 G579 R581
S545 G546 R548
BS02
rna
SR
K7 D20 L23 Q27 R28 T32 V33 I34 H35 K36 R42 Y47 R49 K50 L66 P70 K71 K93 L94 L96 N100 L105 K118 S122 R125 K127 K130 R131 A132 L134 G135 R136 C138 T139 R143 R160 T163 R190 A191 Y198 V207 H209 R216 N234 I236 R399 K491 K494 I495 S498 K499 K501 N502 T503 R510 R575 K588 M592 K594 Q597 N601 G604 K606 R611 D615 H620 K625 R626 K627 G629 K630 K631 D632 R633 R634
K6 D19 L22 Q26 R27 T31 V32 I33 H34 K35 R41 Y46 R48 K49 L65 P69 K70 K92 L93 L95 N99 L104 K117 S121 R124 K126 K129 R130 A131 L133 G134 R135 C137 T138 R142 R159 T162 R189 A190 Y197 V206 H208 R215 N233 I235 R385 K477 K480 I481 S484 K485 K487 N488 T489 R496 R542 K555 M559 K561 Q564 N568 G571 K573 R578 D582 H587 K592 R593 K594 G596 K597 K598 D599 R600 R601
BS03
GDP
SR
N178 V179 G180 K181 S182 S183 V195 Q196 P197 N289 K290 S321 T322 L323
N177 V178 G179 K180 S181 S182 V194 Q195 P196 N288 K289 S320 T321 L322
BS04
MG
SR
S182 T202
S181 T201
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003924
GTPase activity
GO:0005515
protein binding
GO:0005525
GTP binding
GO:1990275
preribosome binding
Biological Process
GO:0000079
regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000463
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001649
osteoblast differentiation
GO:0008156
negative regulation of DNA replication
GO:0008285
negative regulation of cell population proliferation
GO:0022408
negative regulation of cell-cell adhesion
GO:0030336
negative regulation of cell migration
GO:0031397
negative regulation of protein ubiquitination
GO:0033342
negative regulation of collagen binding
GO:0042254
ribosome biogenesis
GO:0042273
ribosomal large subunit biogenesis
GO:0050821
protein stabilization
Cellular Component
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005730
nucleolus
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0016020
membrane
GO:0031965
nuclear membrane
GO:0048471
perinuclear region of cytoplasm
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:8fla
,
PDBe:8fla
,
PDBj:8fla
PDBsum
8fla
PubMed
37410842
UniProt
Q9BZE4
|GTPB4_HUMAN GTP-binding protein 4 (Gene Name=GTPBP4)
[
Back to BioLiP
]