Structure of PDB 8p5d Chain SQ0

Receptor sequence

>8p5dSQ0 (length=142) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]

SIAQVITKGTRKTAISKCVCSESNEFQLMVDNMTLDVHHDNFLVAKIKEI
MKIIGYEHLENLKFELTTRGGGPISRAYAIRQAFAKAVISYFGKYYDEQR
KQDIKEQIMKFDRAALVADPRRVEPKKYGGPAARAKYTKSYR

3D structure

PDB

8p5d Spraguea lophii ribosome

Chain

SQ0

Resolution

10.8 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	SQ0	R12 K13 T14 R70 G72 G73 P74 I75 S76 R77 R114 P121 R122 R123 V124 E125 K127 K128 Y129 A133 A134 R135 A136 K137 T139 K140 Y142	R11 K12 T13 R69 G71 G72 P73 I74 S75 R76 R113 P120 R121 R122 V123 E124 K126 K127 Y128 A132 A133 R134 A135 K136 T138 K139 Y141

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links