Structure of PDB 3j7r Chain SN

Receptor sequence

>3j7rSN (length=150) Species: 9823 (Sus scrofa)

GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIG
VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKH
LERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA

3D structure

• PDB: 3j7r Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
• Chain: SN
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	SN	G2 R3 M4 H5 G8 K9 G10 L11 S12 Q13 S14 A15 L16 R20 S48 Q49 G51 V52 R55 A61 Q62 R64 K70 L72 R73 K76 E86 D87 H90 K94 H101 R104 N105 K107 D108 D110 K112 F113 R114 I116 L117 S120 R121 R124 R127 Y128	G1 R2 M3 H4 G7 K8 G9 L10 S11 Q12 S13 A14 L15 R19 S47 Q48 G50 V51 R54 A60 Q61 R63 K69 L71 R72 K75 E85 D86 H89 K93 H100 R103 N104 K106 D107 D109 K111 F112 R113 I115 L116 S119 R120 R123 R126 Y127

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome

External links

• PDB: RCSB:3j7r, PDBe:3j7r, PDBj:3j7r
• PDBsum: 3j7r
• PubMed: 24930395
• UniProt: A0A4X1TFR5