Structure of PDB 5lyb Chain SM

Receptor sequence

>5lybSM (length=159) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

GNDVEDADVVVLPPKEIVKSNTSSKKADVPPPSADPSKARKNRPRPSGNE
GAIRDKTAGRRNNRSKDVTDSATTKKSNTRRATDRHSRTGKTDTKKKVNQ
GWGDDKKELSAEKEAQADAAAEIAELAAEAEDAAAAAAAAAAAAAAAAAA
AAAAAAAAA

3D structure

PDB

5lyb ?

Chain

Resolution

3.25 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	SM	R68 N71 R72 V76 S79 A80 K84 A90 D92 R93 H94 S95 R96 K99 T100 T102 K104 Q108 K115	R60 N63 R64 V68 S71 A72 K76 A82 D84 R85 H86 S87 R88 K91 T92 T94 K96 Q100 K107
BS02	rna	SM	K27 T30 S31 S32 K33 K34 A42 D43 P44 K46 A47 R48 K49	K19 T22 S23 S24 K25 K26 A34 D35 P36 K38 A39 R40 K41

External links

PDB	RCSB:5lyb, PDBe:5lyb, PDBj:5lyb
PDBsum	5lyb
PubMed	27827794
UniProt	P39015\|STM1_YEAST Suppressor protein STM1 (Gene Name=STM1)

[Back to BioLiP]