Structure of PDB 7qca Chain SE0

Receptor sequence
>7qcaSE0 (length=260) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
VRGPRKHLKRLNAPKSWSLDKNGGVFAPRTSTGPHSMQESIPLCLLLTRI
LKVASNNKEIKHIMKNRLITVNGNIRTDSRYPVGIMDVLSIKKTNEHYRL
LYNIAGKFVLHKITEEEAQYRIAKVTNKKVVKGNIPHTYTSCGGSFKYAD
PSISIGDSVKIDIKTSKIVENSSLEVGKVVYLIKGKNIGCLGVITGIEKR
EGTHDIVNIVDKVGRNFSTIFSNILVVGADDNPWVTFTKDEGIKYSEYEQ
SIKEYGPMNE
3D structure
PDB7qca Spraguea lophii ribosome
ChainSE0
Resolution2.79 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna SE0 V2 R3 G4 R6 K7 H8 K10 L12 K22 N23 F27 P29 R30 T33 N57 N67 R81 K108 V131 K133 G134 Y140 G144 S146 S219 T220 V1 R2 G3 R5 K6 H7 K9 L11 K21 N22 F26 P28 R29 T32 N56 N66 R80 K107 V130 K132 G133 Y139 G143 S145 S218 T219
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7qca, PDBe:7qca, PDBj:7qca
PDBsum7qca
PubMed
UniProtS7XG51

[Back to BioLiP]