Structure of PDB 8p5d Chain SDD

Receptor sequence
>8p5dSDD (length=65) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
MNKQMIKYNADLETTFTVERKDFGRTNRRCRACFAYNGVIRKYDLMICRR
CFREYAGDIGFKIYD
3D structure
PDB8p5d Spraguea lophii ribosome
ChainSDD
Resolution10.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna SDD K7 R20 K21 F23 R25 T26 N37 R41 K42 R49 R50 R53 Y64 D65 K7 R20 K21 F23 R25 T26 N37 R41 K42 R49 R50 R53 Y64 D65
BS02 ZN SDD C30 C33 C48 C51 C30 C33 C48 C51
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7XJB1

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