Structure of PDB 8p5d Chain SC0

Receptor sequence
>8p5dSC0 (length=226) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
EEAEWFPKTSLGKLVKAGRITLDEIFGHSLCIREPEIIDYFLKATLKEEV
LVIKSVQKQTKAGQKTRMKVVLALGDHNNYIGIGSGVARDVVSAINAAKV
VAKCSMRPIKKGFWGNEIGEAHTVPVKALGKCGSVKVQVTPAPKGTGLVA
GGVSKTIFKLAGIKDIFTSSKGQTCTTENFARASLYAITNSTNFNMPNVI
EEKVVELNPILKNAEFLIEQEQRDLR
3D structure
PDB8p5d Spraguea lophii ribosome
ChainSC0
Resolution10.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna SC0 Q79 K80 Q81 K83 A84 Q86 R111 V171 K193 Q57 K58 Q59 K61 A62 Q64 R89 V149 K171
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7W7R5

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