Structure of PDB 8brm Chain SC

Receptor sequence
>8brmSC (length=209) Species: 184922 (Giardia lamblia ATCC 50803) [Search protein sequence]
RRDEENVYYSKYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVI
IQCAEPEVVMGDNHYRLHKIEYLLAGRFMCDPKNFNIWVDKIIKRGLSAE
IMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIVAGKLRAQRARA
NKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIYNPNIRGAVMP
DKIEIGAFS
3D structure
PDB8brm Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis.
ChainSC
Resolution3.33 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna SC R6 R7 D8 E9 R33 A145 G146 K147 Q151 R152 A153 C162 L163 I164 S165 T166 G167 H168 P169 R171 H180 Q185 V187 G189 P205 D206 R1 R2 D3 E4 R28 A140 G141 K142 Q146 R147 A148 C157 L158 I159 S160 T161 G162 H163 P164 R166 H175 Q180 V182 G184 P200 D201
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005634 nucleus
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8brm, PDBe:8brm, PDBj:8brm
PDBsum8brm
PubMed36912103
UniProtA8B8Z2

[Back to BioLiP]