Structure of PDB 6lqs Chain SC

Receptor sequence
>6lqsSC (length=232) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
KKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALK
GRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRS
MVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIR
AIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHV
RKVKLLKQPKFDVGALMALHGEGSGEEKGKKV
3D structure
PDB6lqs Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
ChainSC
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna SC K13 K17 V21 P23 V65 V114 K116 W117 Q118 L120 R136 F138 Q146 N148 Q149 K151 Y155 Q157 S158 S159 H160 R165 K202 D203 K214 K216 K1 K5 V9 P11 V53 V102 K104 W105 Q106 L108 R124 F126 Q134 N136 Q137 K139 Y143 Q145 S146 S147 H148 R153 K190 D191 K202 K204
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0030686 90S preribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:6lqs, PDBe:6lqs, PDBj:6lqs
PDBsum6lqs
PubMed32943522
UniProtP33442|RS3A1_YEAST Small ribosomal subunit protein eS1A (Gene Name=RPS1A)

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