Structure of PDB 8hl3 Chain S13P

Receptor sequence

>8hl3S13P (length=147) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence]

QQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKR
LGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIF
YVRNDIERERRSRSWRGVRHSLGLKVRGQRTRTTGRTGATIGVRRAK

3D structure

PDB

8hl3 Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Chain

S13P

Resolution

4.8 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	S13P	Y25 K31 G32 I33 G34 T37 W79 I80 Y81 N82 R83 Q84 K85 D107 W117 R118 R121 H122 K127 V128 R129 Q131 R132 T133 R134 T135 T136 R138 T139 T142 I143 G144 V145	Y23 K29 G30 I31 G32 T35 W77 I78 Y79 N80 R81 Q82 K83 D105 W115 R116 R119 H120 K125 V126 R127 Q129 R130 T131 R132 T133 T134 R136 T137 T140 I141 G142 V143

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome

External links

PDB	RCSB:8hl3, PDBe:8hl3, PDBj:8hl3
PDBsum	8hl3
PubMed	37604686
UniProt	P39470\|RS13_SULAC Small ribosomal subunit protein uS13 (Gene Name=rps13)