Structure of PDB 8vsa Chain S11

Receptor sequence

>8vsaS11 (length=116) Species: 562 (Escherichia coli) [Search protein sequence]

RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFA
AQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITD
VTPIPHNGCRPPKKRR

3D structure

PDB

8vsa Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.

Chain

S11

Resolution

3.7 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	S11	H21 H23 N27 N28 I30 G38 N39 A40 L41 W43 T45 G47 R52 G53 S54 K56 K86 P114 I115 P116 H117 N118 G119 C120 R121 P123 K124 K125 R126 R127	H10 H12 N16 N17 I19 G27 N28 A29 L30 W32 T34 G36 R41 G42 S43 K45 K75 P103 I104 P105 H106 N107 G108 C109 R110 P112 K113 K114 R115 R116

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:8vsa, PDBe:8vsa, PDBj:8vsa
PDBsum	8vsa
PubMed	38500588
UniProt	B7MCR3\|RS11_ECO45 Small ribosomal subunit protein uS11 (Gene Name=rpsK)