Structure of PDB 8rkv Chain S

Receptor sequence

>8rkvS (length=500) Species: 34078 (Scytonema hofmannii) [Search protein sequence]

KNVIATQLSEEAQVKLEVIQSLLEPCDRTTYGQKLREAAEKLNVSLRTVQ
RLVKNWEQDGLVGLTQTSRADKGKHRIGEFWENFITKTYKEGNKGSKRMT
PKQVALRVEAKARELKDSKPPNYKTVLRVLAPILEKQQKAKSIRSPGWRG
TTLSVKTREGKDLSVDYSNHVWQCDHTRVDVLLVDQHGEILSRPWLTTVI
DTYSRCIMGINLGFDAPSSGVVALALRHAILPKRYGSEYKLHCEWGTYGK
PEHFYTDGGKDFRSNHLSQIGAQLGFVCHLRDRPSEGGVVERPFKTLNDQ
LFSTLPGYTGSNVQERPEDAEKDARLTLRELEQLLVRYIVDRYNQSIDAR
MGDQTRFERWEAGLPTVPVPIPERDLDICLMKQSRRTVQRGGCLQFQNLM
YRGEYLAGYAGETVNLRFDPRDITTILVYRQENNQEVFLTRAHAQGLETE
QLALDEAEAASRRLRTAGKTISNQSLLQEVVDERQKLEQTVLRSAAVDES

3D structure

PDB

8rkv Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Chain

Resolution

3.11 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	S	S172 R174 T207 R208 R223 W225 E321 R322 K325 S341 V343 R346 R526	S142 R144 T177 R178 R193 W195 E291 R292 K295 S311 V313 R316 R484
BS02	dna	S	S175 G177 W178 R179 R235 S315 G318 V319 R322 Q330 A379 R380	S145 G147 W148 R149 R205 S285 G288 V289 R292 Q300 A349 R350
BS03	dna	S	V74 S75 R77 T78 R81 Q96 R99 A100 D101 R106 K132 Y153 K154 L157	V44 S45 R47 T48 R51 Q66 R69 A70 D71 R76 K102 Y123 K124 L127
BS04	dna	S	R77 Q80 R81 K84 R99 K102 G103 K104 H105 R106 I107 N152 T155 R158 A246 S248 S249 N295 R420	R47 Q50 R51 K54 R69 K72 G73 K74 H75 R76 I77 N122 T125 R128 A216 S218 S219 N265 R390
BS05	dna	S	D287 R416 T417 Q425 F426 Q427 N428 R492 R495	D257 R386 T387 Q395 F396 Q397 N398 R462 R465
BS06	MG	S	D205 D287	D175 D257

External links

PDB	RCSB:8rkv, PDBe:8rkv, PDBj:8rkv
PDBsum	8rkv
PubMed	38834066
UniProt	A0A979HMQ2

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