Structure of PDB 8kd3 Chain S

Receptor sequence
>8kd3S (length=103) Species: 8355 (Xenopus laevis) [Search protein sequence]
RQSTGKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT
DLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRI
RGE
3D structure
PDB8kd3 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
ChainS
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna S R40 Y41 R72 R83 F84 Q85 R116 V117 T118 R10 Y11 R42 R53 F54 Q55 R86 V87 T88
BS02 dna S R40 Y41 V46 R49 R63 K64 L65 P66 R69 R10 Y11 V16 R19 R33 K34 L35 P36 R39
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8kd3, PDBe:8kd3, PDBj:8kd3
PDBsum8kd3
PubMed37666978
UniProtA0A310TTQ1

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