Structure of PDB 8c94 Chain S

Receptor sequence
>8c94S (length=100) Species: 562 (Escherichia coli) [Search protein sequence]
METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKV
LESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRRILKRTSHITVVVSDR
3D structure
PDB8c94 Cryo-EM captures early ribosome assembly in action.
ChainS
Resolution3.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna S I4 K6 H7 R8 H9 S13 Q15 K16 R18 R25 K41 K42 E52 A56 N57 H60 N61 D77 E78 G79 P80 R95 K98 R99 I4 K6 H7 R8 H9 S13 Q15 K16 R18 R25 K41 K42 E52 A56 N57 H60 N61 D77 E78 G79 P80 R85 K88 R89
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042255 ribosome assembly
GO:0042256 cytosolic ribosome assembly
GO:0046677 response to antibiotic
GO:1902626 assembly of large subunit precursor of preribosome
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8c94, PDBe:8c94, PDBj:8c94
PDBsum8c94
PubMed36797249
UniProtP61175|RL22_ECOLI Large ribosomal subunit protein uL22 (Gene Name=rplV)

[Back to BioLiP]