Structure of PDB 6q97 Chain S

Receptor sequence

>6q97S (length=108) Species: 562 (Escherichia coli)

TIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLE
SAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH
ITVVVSDR

3D structure

• PDB: 6q97 How a circularized tmRNA moves through the ribosome.
• Chain: S
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	S	K6 H7 R8 H9 R11 S13 K16 R18 R25 K41 E52 S53 N57 N61 D77 E78 P80 R84 M86 P87 R88 A89 K90 G91 R92 D94 I96 L97 K98 R99	K4 H5 R6 H7 R9 S11 K14 R16 R23 K39 E50 S51 N55 N59 D75 E76 P78 R82 M84 P85 R86 A87 K88 G89 R90 D92 I94 L95 K96 R97

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 14:09:45 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6q97', asym_id = 'S', title = 'How a circularized tmRNA moves through the ribosome.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6q97', asym_id='S', title='How a circularized tmRNA moves through the ribosome.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412,0015934', uniprot = '', pdbid = '6q97', asym_id = 'S'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015934', uniprot='', pdbid='6q97', asym_id='S')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>