Structure of PDB 6cnd Chain S

Receptor sequence
>6cndS (length=217) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
AAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAIQLKL
NPDGTMAIDEETMVVDRHKNASIENEYKEKVDENPFANLYNYGSYGRGSY
TDPWTVEEMIKFYKALSMWGTDFNLISQLYPYRSRKQVKAKFVNEEKKRP
ILIELALRSKLPPNFDEYCCEIKKNIGTVADFNEKLIELQNEHKHHMKEI
EEAKNTAKEEDQTAQRL
3D structure
PDB6cnd Structural visualization of RNA polymerase III transcription machineries.
ChainS
Resolution4.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna S R413 G414 T417 A456 N460 R97 G98 T101 A140 N144
BS02 dna S N407 Y408 G409 Y416 K455 N91 Y92 G93 Y100 K139
Gene Ontology
Molecular Function
GO:0000995 RNA polymerase III general transcription initiation factor activity
GO:0001156 TFIIIC-class transcription factor complex binding
Biological Process
GO:0001112 DNA-templated transcription open complex formation
GO:0006355 regulation of DNA-templated transcription
GO:0006359 regulation of transcription by RNA polymerase III
GO:0006383 transcription by RNA polymerase III
GO:0070898 RNA polymerase III preinitiation complex assembly
Cellular Component
GO:0000126 transcription factor TFIIIB complex
GO:0005634 nucleus
GO:0005654 nucleoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6cnd, PDBe:6cnd, PDBj:6cnd
PDBsum6cnd
PubMed30083386
UniProtP46678|TFC5_YEAST Transcription factor TFIIIB component B'' (Gene Name=BDP1)

[Back to BioLiP]