Structure of PDB 5t61 Chain S

Receptor sequence

>5t61S (length=569) Species: 145261 (Methanothermobacter wolfeii)

MEYIIKNGFVYCPLNGVDGEKMDICVKDGKIVESVSDSAKVIDASGKIVM
PGGVDPHSHIAGAKVNVGRMYRPEDSKRDAEKFKGGRAGSGFSVPSTFMT
GYRYAQMGYTTAMEAAMPPLLARHTHEEFHDTPIIDHAAYPLFGNNWFVM
EYLKEGDVDACAAYASWLLRATKGYTIKIVNPAGTEAWGWGGNVHGIYDP
APYFDITPAEIIKGLAEVNEKLQLPHSIHLHCNDLGHPGNYETTLASFDV
PKNIKPNPATGSRDTVLYATHVQFHSYGGTTWRDFVSEAPKIADYVNKND
HIVIDVGQITLDETTTMTADGPMEYDLHSLNGLKWANCDVELETGSGVVP
FIYSARAPVPAVQWAIGMELFLLIDNPEKVCLTTDSPNAGPFTRYPRVIA
WLMSNKYRMNLIEGELHKWAQRKSTVATIDREYTFSEIAQITRATSAKVL
GLSDTKGHLGVGADADIAVYDINPETVDPSAEYMAIEEAFSRAACVLKDG
EIVVKDGEVVASPHGRTYWVDTQVDESIYSEVLANVESKFKQYYSVNFAN
YPVQDDYLPKSAPVKGVML

3D structure

• PDB: 5t61 The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.
• Chain: S
• Resolution: 2.55 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ZN	S	K178 H231 H271	K178 H231 H271
BS02	ZN	S	H57 H59 K178 D385	H57 H59 K178 D385
BS03	MFN	S	H231 L235 H271 F274 W282 T318 L327 F351 V359 Q363 D385 N388 W419	H231 L235 H271 F274 W282 T318 L327 F351 V359 Q363 D385 N388 W419

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Dec 3 04:10:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5t61', asym_id = 'S', title = 'The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5t61', asym_id='S', title='The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0016810', uniprot = '', pdbid = '5t61', asym_id = 'S'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016810', uniprot='', pdbid='5t61', asym_id='S')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>