Structure of PDB 5vpo Chain RT

Receptor sequence
>5vpoRT (length=137) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MNRGALIKLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVI
RIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLY
FIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK
3D structure
PDB5vpo Mechanism of tRNA-mediated +1 ribosomal frameshifting.
ChainRT
Resolution3.34 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna RT R41 D107 R108 R118 K119 D122 R125 R41 D107 R108 R118 K119 D122 R125
BS02 rna RT N2 G4 A5 R23 R51 R53 R54 N55 G56 N58 T60 R93 R95 R96 A97 K98 F101 K113 K119 N2 G4 A5 R23 R51 R53 R54 N55 G56 N58 T60 R93 R95 R96 A97 K98 F101 K113 K119
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5vpo, PDBe:5vpo, PDBj:5vpo
PDBsum5vpo
PubMed30262649
UniProtP60490|RL19_THET8 Large ribosomal subunit protein bL19 (Gene Name=rplS)

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