Structure of PDB 3jag Chain RR

Receptor sequence

>3jagRR (length=129) Species: 9986 (Oryctolagus cuniculus)

MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI
AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDP
DTKEMLKLLDFGSLSNLQVTQPTVGMNFK

3D structure

• PDB: 3jag Structural basis for stop codon recognition in eukaryotes.
• Chain: RR
• Resolution: 3.65 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	RR	M1 G2 R3 V4 R5 T6 K7 T8 K10 F28 K32 K44 K45 N48 K49 G52 T55 H56 R60 R63 R67 P122 T123 V124 G125 K129	M1 G2 R3 V4 R5 T6 K7 T8 K10 F28 K32 K44 K45 N48 K49 G52 T55 H56 R60 R63 R67 P122 T123 V124 G125 K129

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005634 nucleus
• GO:0005730 nucleolus
• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022626 cytosolic ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3jag, PDBe:3jag, PDBj:3jag
• PDBsum: 3jag
• PubMed: 26245381
• UniProt: G1TU13|RS17_RABIT Small ribosomal subunit protein eS17 (Gene Name=RPS17)