Structure of PDB 6oj2 Chain RG

Receptor sequence

>6oj2RG (length=181) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

PLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDAR
ILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWI
FLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDA
LRGMDIAVVTTAETDEEARALLELLGFPFRK

3D structure

PDB

6oj2 Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.

Chain

Resolution

3.2 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	RG	S76 I77 S78	S75 I76 S77
BS02	rna	RG	K36 N40 G42 G44 K47 T71 K74 F80 I88 G89 R91 S124 F125 D126 R128 N130 N132 L133 G134 L135 R136 G154 D156	K35 N39 G41 G43 K46 T70 K73 F79 I87 G88 R90 S123 F124 D125 R127 N129 N131 L132 G133 L134 R135 G153 D155
BS03	rna	RG	P2 N27 W29 E30 Q66 K67 A69 V70 V92 T93 R95 R98	P1 N26 W28 E29 Q65 K66 A68 V69 V91 T92 R94 R97

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6oj2, PDBe:6oj2, PDBj:6oj2
PDBsum	6oj2
PubMed	32601241
UniProt	Q5SHQ0\|RL5_THET8 Large ribosomal subunit protein uL5 (Gene Name=rplE)

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