Structure of PDB 8pfr Chain RE

Receptor sequence

>8pfrRE (length=127) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

ASLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNIS
QPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNIS
AKNRVVILARAKALGIKVTNPKGRLAL

3D structure

PDB

8pfr Real-space refinement in PHENIX for cryo-EM and crystallography.

Chain

Resolution

2.15 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	RE	K11 K12 K15 F17 R19 H21 R24 Y25 H26 R27 N31 W32 R33 K34 K36 G37 I38 D39 S40 R43 R44 R45 F46 R47 P53 K54 I55 G56 Y57 G58 S59 N60 K61 K64 F65 P68 N78 K80 E95 A97 H98 N99 I100 S101 K103 N104 R105 N121 R125	K10 K11 K14 F16 R18 H20 R23 Y24 H25 R26 N30 W31 R32 K33 K35 G36 I37 D38 S39 R42 R43 R44 F45 R46 P52 K53 I54 G55 Y56 G57 S58 N59 K60 K63 F64 P67 N77 K79 E94 A96 H97 N98 I99 S100 K102 N103 R104 N120 R124
BS02	MG	RE	K34 P53	K33 P52

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8pfr, PDBe:8pfr, PDBj:8pfr
PDBsum	8pfr
PubMed
UniProt	P38061\|RL32_YEAST Large ribosomal subunit protein eL32 (Gene Name=RPL32)

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