Structure of PDB 6b4v Chain RC

Receptor sequence
>6b4vRC (length=151) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLA
VQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGA
VPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKG
E
3D structure
PDB6b4v Mechanism of Inhibition of Translation Termination by Blasticidin S.
ChainRC
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna RC R14 T16 A17 R18 M19 R24 R25 F45 K47 K57 G85 A86 K92 I101 A102 G103 L119 T120 K121 E122 L123 S125 R126 N127 N130 R10 T12 A13 R14 M15 R20 R21 F41 K43 K53 G81 A82 K88 I97 A98 G99 L115 T116 K117 E118 L119 S121 R122 N123 N126
BS02 MG RC R27 K47 R23 K43
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6b4v, PDBe:6b4v, PDBj:6b4v
PDBsum6b4v
PubMed29366636
UniProtP62665|RS5_THET2 Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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