Structure of PDB 5jut Chain RB

Receptor sequence
>5jutRB (length=107) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
QQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLK
ISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDV
EVVVASN
3D structure
PDB5jut Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome.
ChainRB
Resolution4.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna RB R23 V31 E35 K53 G54 V56 R57 L58 P59 T60 T67 R68 K69 T70 P71 N72 E74 G75 S76 W79 R85 K88 R89 Y90 R9 V17 E21 K39 G40 V42 R43 L44 P45 T46 T53 R54 K55 T56 P57 N58 E60 G61 S62 W65 R71 K74 R75 Y76
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5jut, PDBe:5jut, PDBj:5jut
PDBsum5jut
PubMed27159452
UniProtP38701|RS20_YEAST Small ribosomal subunit protein uS10 (Gene Name=RPS20)

[Back to BioLiP]