Structure of PDB 4ypb Chain R8

Receptor sequence
>4ypbR8 (length=64) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLA
KPEAERIKLLLPYE
3D structure
PDB4ypb Defining the mRNA recognition signature of a bacterial toxin protein.
ChainR8
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna R8 P2 K3 M4 K5 T6 K8 K11 K12 R13 T17 A18 S19 K21 T27 K29 R30 H31 L32 N33 W34 K39 I41 R42 Q43 K44 K47 K52 L61 L62 Y64 P1 K2 M3 K4 T5 K7 K10 K11 R12 T16 A17 S18 K20 T26 K28 R29 H30 L31 N32 W33 K38 I40 R41 Q42 K43 K46 K51 L60 L61 Y63
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:4ypb, PDBe:4ypb, PDBj:4ypb
PDBsum4ypb
PubMed26508639
UniProtQ5SKU1|RL35_THET8 Large ribosomal subunit protein bL35 (Gene Name=rpmI)

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