Structure of PDB 6frk Chain R

Receptor sequence

>6frkR (length=180) Species: 9986 (Oryctolagus cuniculus)

SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLII
RKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRI
LRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKAR
KKLLADQAEARRSKTKEARKRREERLQAKK

3D structure

• PDB: 6frk Structure of a prehandover mammalian ribosomal SRP·SRP receptor targeting complex.
• Chain: R
• Resolution: 3.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	R	S2 M3 K8 R9 G18 K19 K20 K21 W23 L24 P26 S37 R38 Q39 R42 K43 K46 V55 T56 H58 S59 R60 A61 R62 C63 R70 R71 R74 H75 M76 G77 I78 G79 R81 K82 G83 T84 N86 A87 R88 P90 K92 W95 M96 R100 I101 R103 R104 R107 Y109 R110 K113 K114 R117 H118 Y120 H121 Y124 L125 K128 G129 N130 N134 H143 K146	S1 M2 K7 R8 G17 K18 K19 K20 W22 L23 P25 S36 R37 Q38 R41 K42 K45 V54 T55 H57 S58 R59 A60 R61 C62 R69 R70 R73 H74 M75 G76 I77 G78 R80 K81 G82 T83 N85 A86 R87 P89 K91 W94 M95 R99 I100 R102 R103 R106 Y108 R109 K112 K113 R116 H117 Y119 H120 Y123 L124 K127 G128 N129 N133 H142 K145

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 20:04:45 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6frk', asym_id = 'R', title = 'Structure of a prehandover mammalian ribosomal SRP&#183;SRP receptor targeting complex.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6frk', asym_id='R', title='Structure of a prehandover mammalian ribosomal SRP&#183;SRP receptor targeting complex.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0022625', uniprot = '', pdbid = '6frk', asym_id = 'R'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0022625', uniprot='', pdbid='6frk', asym_id='R')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>