Structure of PDB 5wdt Chain R

Receptor sequence
>5wdtR (length=102) Species: 562 (Escherichia coli) [Search protein sequence]
MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIG
VPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITG
IS
3D structure
PDB5wdt Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A.
ChainR
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna R G8 G9 K10 E23 K24 R68 K71 I74 F77 R78 R79 R80 K81 Y83 K85 Q86 Q87 G88 H89 R90 Q91 G8 G9 K10 E23 K24 R68 K71 I74 F77 R78 R79 R80 K81 Y83 K85 Q86 Q87 G88 H89 R90 Q91
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:5wdt, PDBe:5wdt, PDBj:5wdt
PDBsum5wdt
PubMed29733411
UniProtP0AG48|RL21_ECOLI Large ribosomal subunit protein bL21 (Gene Name=rplU)

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