Structure of PDB 5lqw Chain R

Receptor sequence
>5lqwR (length=219) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
DLEELREYQRRKRTEYEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIF
ERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAISTLPRVDKLWYK
YLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQKNWNGVREI
YSKYVMAHPQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVAVAKLVNSF
AHWEAAQQRSSALYQIAIE
3D structure
PDB5lqw Molecular architecture of the Saccharomyces cerevisiae activated spliceosome
ChainR
Resolution5.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna R R60 Q67 I69 R70 P100 L101 R22 Q29 I31 R32 P62 L63
Gene Ontology
Molecular Function
GO:0003682 chromatin binding
GO:0003688 DNA replication origin binding
GO:0005515 protein binding
Biological Process
GO:0000245 spliceosomal complex assembly
GO:0000354 cis assembly of pre-catalytic spliceosome
GO:0000398 mRNA splicing, via spliceosome
GO:0006270 DNA replication initiation
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000785 chromatin
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0071004 U2-type prespliceosome
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome
GO:0071008 U2-type post-mRNA release spliceosomal complex
GO:0071014 post-mRNA release spliceosomal complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5lqw, PDBe:5lqw, PDBj:5lqw
PDBsum5lqw
PubMed27562955
UniProtQ12309|CLF1_YEAST Pre-mRNA-splicing factor CLF1 (Gene Name=CLF1)

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