Structure of PDB 5lj5 Chain R

Receptor sequence
>5lj5R (length=97) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
SYNGIGLKSAKGSSTSGHVQRSLASNNRRRPQGSQQQRQQRQNAIKKASI
ETHMEKREIEVQVSELRDRLEEEETLSEEQIDKKCEALRAKLTNEWQ
3D structure
PDB5lj5 Cryo-EM structure of the spliceosome immediately after branching.
ChainR
Resolution10.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna R K12 G13 K11 G12
BS02 rna R Y3 T16 S17 H19 V20 Y2 T15 S16 H18 V19
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005684 U2-type spliceosomal complex
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5lj5, PDBe:5lj5, PDBj:5lj5
PDBsum5lj5
PubMed27459055
UniProtQ03375|CWC21_YEAST Pre-mRNA-splicing factor CWC21 (Gene Name=CWC21)

[Back to BioLiP]