Structure of PDB 2y0s Chain R

Receptor sequence
>2y0sR (length=1085) Species: 2286 (Saccharolobus shibatae) [Search protein sequence]
LSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIP
GLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVE
NNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIV
NGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTVTIERLKDGTF
HVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSLEQAS
SIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRK
KAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKA
FVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGGRTGV
SQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPE
GPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVKWSKVI
LNGRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTDFINEVHVNCD
SGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEE
ENAYVALEPSDLTPEHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSA
MAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNN
AILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQED
KIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPAKRD
TSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQ
KGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAA
LSGNIVDATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIY
FGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERD
CLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGD
KSNLFPVTVSYAFKLLIQELMSMIISPRLILEDRV
3D structure
PDB2y0s Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit.
ChainR
Resolution3.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN R C1067 I1084 C1030 I1047
BS02 ZN R H570 N572 H546 N548
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2y0s, PDBe:2y0s, PDBj:2y0s
PDBsum2y0s
PubMed21265742
UniProtB8YB55|RPO2_SACSH DNA-directed RNA polymerase subunit Rpo2 (Gene Name=rpo2)

[Back to BioLiP]