Structure of PDB 4ypb Chain QB

Receptor sequence
>4ypbQB (length=236) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERT
FRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTN
FKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRL
LKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGN
DDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQ
3D structure
PDB4ypb Defining the mRNA recognition signature of a bacterial toxin protein.
ChainQB
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna QB N37 R96 G99 T103 N104 I108 R111 R144 I172 E176 K179 N33 R92 G95 T99 N100 I104 R107 R140 I168 E172 K175
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4ypb, PDBe:4ypb, PDBj:4ypb
PDBsum4ypb
PubMed26508639
UniProtP80371|RS2_THET8 Small ribosomal subunit protein uS2 (Gene Name=rpsB)

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