Structure of PDB 5y6p Chain Q4

Receptor sequence
>5y6pQ4 (length=164) Species: 35689 (Griffithsia pacifica) [Search protein sequence]
MKSVITTTISAADAAGRFPSSSDLESIQGNIQRASARLEAAEKLSGNHEA
VVKEAGDACFAKYSYLKNSGEAGDSQEKINKCYRDVDHYMRLINYSLVVG
GTGPLDEWGIAGSREVYRTLNLPGSAYIASFTFTRDRLCVPRDMSSQAGV
EFVAALDYVINSLS
3D structure
PDB5y6p Structure of phycobilisome from the red alga Griffithsia pacifica
ChainQ4
Resolution3.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PEB Q4 F60 K78 K81 C82 R84 D85 Y89 Y127 F60 K78 K81 C82 R84 D85 Y89 Y127
BS02 PEB Q4 K43 L44 N47 E54 R137 L138 C139 D143 K43 L44 N47 E54 R137 L138 C139 D143
BS03 PEB Q4 D106 E107 D106 E107
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Nov 28 14:28:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5y6p', asym_id = 'Q4', title = 'Structure of phycobilisome from the red alga Griffithsia pacifica'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5y6p', asym_id='Q4', title='Structure of phycobilisome from the red alga Griffithsia pacifica')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0015979,0030089', uniprot = '', pdbid = '5y6p', asym_id = 'Q4'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0015979,0030089', uniprot='', pdbid='5y6p', asym_id='Q4')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>