Structure of PDB 8s8j Chain Q

Receptor sequence

>8s8jQ (length=141) Species: 284590 (Kluyveromyces lactis NRRL Y-1140)

TVPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPL
LLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSK
NELKKAFTSYDRTLLIADSRRPEPKKFGGRGARSRFQKSYR

3D structure

• PDB: 8s8j Structural basis of AUC codon discrimination during translation initiation in yeast.
• Chain: Q
• Resolution: 4.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Q	Q8 T9 F10 K13 K14 S15 H21 L28 G33 E42 R66 K68 T70 G71 G72 G73 H74 V75 S76 Q77 K87 R122 R123 E125 P126 K127 K128 F129 R132 G133 A134 R135 S136 R137 Q139 K140 S141 Y142 R143	Q6 T7 F8 K11 K12 S13 H19 L26 G31 E40 R64 K66 T68 G69 G70 G71 H72 V73 S74 Q75 K85 R120 R121 E123 P124 K125 K126 F127 R130 G131 A132 R133 S134 R135 Q137 K138 S139 Y140 R141

External links

• PDB: RCSB:8s8j, PDBe:8s8j, PDBj:8s8j
• PDBsum: 8s8j
• PubMed: 39193907
• UniProt: Q875N2|RS16_KLULA Small ribosomal subunit protein uS9 (Gene Name=RPS16)