Structure of PDB 5ylz Chain Q

Receptor sequence
>5ylzQ (length=201) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
LTDQIAKNVKLDDFIPKRQSNFELSVPLPTKAEIQECTARTKSYIQRLVN
AKLANSNNRASSRYVAPANLLLNNSHHIEVVSKQMDPLLPRFVGKKARKV
VAPTENDEVVPVLHMGEADPNEWKIPAAVSNWKNPNGYTVALERRVENNT
INDGFMKLSEALENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQ
R
3D structure
PDB5ylz Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae
ChainQ
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Q K117 V127 K133 K83 V93 K99
BS02 rna Q N174 P175 N176 Y178 N134 P135 N136 Y138
Gene Ontology
Molecular Function
GO:0000384 first spliceosomal transesterification activity
GO:0000386 second spliceosomal transesterification activity
GO:0005515 protein binding
Biological Process
GO:0000350 generation of catalytic spliceosome for second transesterification step
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome
GO:0071014 post-mRNA release spliceosomal complex

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Cellular Component
External links
PDB RCSB:5ylz, PDBe:5ylz, PDBj:5ylz
PDBsum5ylz
PubMed29153833
UniProtP28004|PRP45_YEAST Pre-mRNA-processing protein 45 (Gene Name=PRP45)

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